Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| discoidin domain-containing protein | FBD94_04350 | Not Available | Positive | 1102502 - 1102990 | 18457.1 |
| alpha-l-fucosidase | FBD94_04355 | Not Available | Positive | 1103115 - 1104425 | 51135.9 |
| tonb-dependent receptor | FBD94_04360 | Not Available | Positive | 1104510 - 1107818 | 120455.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_04365 | Not Available | Positive | 1107837 - 1109444 | 59017.7 |
| duf5017 domain-containing protein | FBD94_04370 | Not Available | Positive | 1109470 - 1110408 | 33852.6 |
| glycoside hydrolase family 5 protein | FBD94_04375 | Not Available | Positive | 1110442 - 1111470 | 39114.3 |
| sialate o-acetylesterase | FBD94_04380 | Not Available | Positive | 1111480 - 1113072 | 58666.6 |
| duf4380 domain-containing protein | FBD94_04385 | Not Available | Positive | 1113114 - 1114457 | 50258.9 |
| mfs transporter | FBD94_04390 | Not Available | Positive | 1114447 - 1115694 | 45449.6 |
| glycosyl hydrolase family protein | FBD94_04395 | Not Available | Positive | 1115691 - 1116629 | 36367.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

