Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf72 domain-containing protein | FBD94_04200 | Not Available | Positive | 1067377 - 1068144 | 29462.5 |
| pas domain s-box protein | FBD94_04205 | Not Available | Positive | 1068207 - 1069379 | 43884.1 |
| catalase | FBD94_04210 | Not Available | Positive | 1069605 - 1071794 | 81026.7 |
| ankyrin repeat domain-containing protein | FBD94_04215 | Not Available | Negative | 1071850 - 1072323 | 17005.5 |
| chromate transporter | FBD94_04220 | Not Available | Negative | 1072537 - 1073718 | 42177.3 |
| hypothetical protein | FBD94_04225 | Not Available | Negative | 1073729 - 1074214 | 17179.8 |
| helix-turn-helix domain-containing protein | FBD94_04230 | Not Available | Negative | 1074300 - 1075157 | 32493.9 |
| phosphatase pap2 family protein | FBD94_04235 | Not Available | Positive | 1075392 - 1076057 | 25337.0 |
| gtra family protein | FBD94_04240 | Not Available | Positive | 1076038 - 1076478 | 16984.9 |
| glycosyltransferase family 39 protein | FBD94_04245 | Not Available | Positive | 1076444 - 1077997 | 59825.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

