Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_00325 | Not Available | Negative | 74741 - 75019 | 10920.1 |
| duf2147 domain-containing protein | FBD94_00330 | Not Available | Positive | 75777 - 76310 | 20398.8 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 76379 - 76757 | Not Available |
| tonb-dependent receptor | FBD94_00335 | Not Available | Positive | 76391 - 78838 | 88962.4 |
| rna polymerase sigma-70 factor | FBD94_00340 | Not Available | Positive | 78907 - 79518 | 23473.7 |
| duf4974 domain-containing protein | FBD94_00345 | Not Available | Positive | 79597 - 80799 | 44538.0 |
| susc/raga family tonb-linked outer membrane protein | FBD94_00350 | Not Available | Positive | 80956 - 84621 | 135946.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_00355 | Not Available | Positive | 84632 - 86077 | 54094.1 |
| hypothetical protein | FBD94_00360 | Not Available | Positive | 86097 - 87407 | 47783.6 |
| duf4302 domain-containing protein | FBD94_00365 | Not Available | Positive | 87415 - 88746 | 47856.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

