Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional riboflavin kinase/fad synthetase | FBD94_00275 | Not Available | Negative | 63922 - 64857 | 35015.4 |
| yitt family protein | FBD94_00280 | Not Available | Negative | 64862 - 65725 | 30959.2 |
| trna pseudouridine(55) synthase trub | FBD94_00285 | Not Available | Negative | 65728 - 66453 | 27105.4 |
| undecaprenyl-diphosphate phosphatase | FBD94_00290 | Not Available | Negative | 66453 - 67247 | 29378.0 |
| duf3098 domain-containing protein | FBD94_00295 | Not Available | Negative | 67257 - 67481 | 8190.42 |
| ftsx-like permease family protein | FBD94_00300 | Not Available | Negative | 67481 - 68359 | 32538.6 |
| hypothetical protein | FBD94_00305 | Not Available | Positive | 68577 - 68984 | 14879.7 |
| chloride channel protein | FBD94_00310 | Not Available | Positive | 69108 - 70364 | 45096.3 |
| leucine--trna ligase | FBD94_00315 | Not Available | Positive | 70443 - 73262 | 107991.0 |
| rpn family recombination-promoting nuclease/putative transposase | FBD94_00320 | Not Available | Negative | 73336 - 74289 | 36861.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

