Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | FBD94_00230 | Not Available | Positive | 53033 - 54034 | 36185.7 |
| hypothetical protein | FBD94_00235 | Not Available | Positive | 54050 - 54271 | 8245.45 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 54726 - 54837 | Not Available |
| recombinase reca | FBD94_00240 | Not Available | Negative | 54450 - 55466 | 36382.1 |
| endonuclease iii | FBD94_00245 | Not Available | Negative | 55588 - 56265 | 25590.0 |
| hypothetical protein | FBD94_00250 | Not Available | Negative | 56336 - 56521 | 7209.55 |
| sigma-70 family rna polymerase sigma factor | FBD94_00255 | Not Available | Negative | 56656 - 57231 | 22455.2 |
| excinuclease abc subunit uvra | FBD94_00260 | Not Available | Positive | 57522 - 60320 | 104255.0 |
| lysine transporter lyse | FBD94_00265 | Not Available | Positive | 60343 - 60963 | 23394.2 |
| sodium:proton antiporter | FBD94_00270 | Not Available | Negative | 61216 - 63438 | 81399.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

