Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin-binding protein | FBD94_02790 | Not Available | Positive | 736967 - 737764 | 30343.0 |
| Trna-leu | Not Available | Not Available | Positive | 737930 - 738014 | Not Available |
| hypothetical protein | FBD94_02800 | Not Available | Negative | 738127 - 738957 | 30999.2 |
| trigger factor | FBD94_02805 | Not Available | Positive | 739443 - 740789 | 51222.0 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | FBD94_02810 | Not Available | Positive | 740970 - 741662 | 25547.8 |
| atp-dependent clp protease atp-binding subunit clpx | FBD94_02815 | Not Available | Positive | 741666 - 742907 | 45843.6 |
| amp nucleosidase | FBD94_02820 | Not Available | Positive | 743060 - 743833 | 28642.8 |
| histidine phosphatase family protein | FBD94_02825 | Not Available | Negative | 743830 - 744330 | 18845.4 |
| glycosyltransferase family 9 protein | FBD94_02830 | Not Available | Negative | 744344 - 745324 | 37050.2 |
| d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase | FBD94_02835 | Not Available | Negative | 745341 - 745838 | 18044.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

