Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | FBD94_02740 | Not Available | Negative | 724628 - 725818 | 45263.0 |
| smug2 dna glycosylase family protein | FBD94_02745 | Not Available | Negative | 725915 - 726616 | 27192.7 |
| hepn domain-containing protein | FBD94_02750 | Not Available | Positive | 726892 - 728997 | 79046.1 |
| uroporphyrinogen-iii c-methyltransferase | FBD94_02755 | Not Available | Positive | 728981 - 729766 | 28028.9 |
| siroheme synthase | FBD94_02760 | Not Available | Positive | 729772 - 731241 | 52963.2 |
| phosphoadenylyl-sulfate reductase | FBD94_02765 | Not Available | Positive | 731244 - 731948 | 27159.2 |
| sulfate adenylyltransferase subunit cysd | FBD94_02770 | Not Available | Positive | 731961 - 732866 | 34373.8 |
| gtp-binding protein | FBD94_02775 | Not Available | Positive | 732866 - 734116 | 46334.2 |
| glycogen synthase | FBD94_02780 | Not Available | Positive | 734203 - 735609 | 53137.8 |
| glucose-1-phosphate adenylyltransferase | FBD94_02785 | Not Available | Positive | 735621 - 736892 | 46581.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

