Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyketide cyclase | FBD94_02690 | Not Available | Positive | 713344 - 713769 | 16056.6 |
| tonb-dependent receptor | FBD94_02695 | Not Available | Positive | 713985 - 716300 | 84624.5 |
| pepsy domain-containing protein | FBD94_02700 | Not Available | Positive | 716306 - 717460 | 43445.7 |
| gdp-mannose pyrophosphatase nudk | FBD94_02705 | Not Available | Negative | 717478 - 718056 | 21886.9 |
| rna polymerase sigma-70 factor | FBD94_02710 | Not Available | Positive | 718293 - 718892 | 23039.9 |
| duf4974 domain-containing protein | FBD94_02715 | Not Available | Positive | 718947 - 719975 | 39733.2 |
| tonb-dependent receptor | FBD94_02720 | Not Available | Positive | 719976 - 722627 | 100182.0 |
| g-d-s-l family lipolytic protein | FBD94_02725 | Not Available | Positive | 722679 - 723377 | 26440.2 |
| gtra family protein | FBD94_02730 | Not Available | Negative | 723382 - 723804 | 15761.3 |
| cdp-alcohol phosphatidyltransferase | FBD94_02735 | Not Available | Negative | 723804 - 724529 | 27443.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

