Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_02590 | Not Available | Positive | 688068 - 691697 | 133908.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_02595 | Not Available | Positive | 691709 - 693067 | 51483.0 |
| abc transporter atp-binding protein | FBD94_02600 | Not Available | Positive | 693118 - 694047 | 34369.9 |
| abc transporter | FBD94_02605 | Not Available | Positive | 694078 - 696369 | 85904.4 |
| dna mismatch repair protein | FBD94_02610 | Not Available | Positive | 696387 - 697724 | 50300.6 |
| dna mismatch repair protein | FBD94_02615 | Not Available | Positive | 697727 - 699049 | 48969.2 |
| duf5117 domain-containing protein | FBD94_02620 | Not Available | Positive | 699108 - 701645 | 96354.7 |
| phytanoyl-coa dioxygenase family protein | FBD94_02625 | Not Available | Negative | 701840 - 702646 | 30407.6 |
| sdr family oxidoreductase | FBD94_02630 | Not Available | Negative | 702937 - 703716 | 28259.3 |
| transglutaminase family protein | FBD94_02635 | Not Available | Negative | 703787 - 704806 | 39072.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

