Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_02540 | Not Available | Positive | 674735 - 677938 | 117241.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_02545 | Not Available | Positive | 677973 - 679505 | 56444.4 |
| alkaline phosphatase | FBD94_02550 | Not Available | Positive | 679579 - 681381 | 66248.3 |
| duf3943 domain-containing protein | FBD94_02555 | Not Available | Negative | 681460 - 682857 | 53106.1 |
| gnat family n-acetyltransferase | FBD94_02560 | Not Available | Positive | 683011 - 683520 | 19270.2 |
| hypothetical protein | FBD94_02565 | Not Available | Negative | 683538 - 683807 | 10478.2 |
| had family phosphatase | FBD94_02570 | Not Available | Negative | 683826 - 684488 | 24743.5 |
| cysteine desulfurase | FBD94_02575 | Not Available | Positive | 684832 - 685992 | 42430.1 |
| rna polymerase sigma-70 factor | FBD94_02580 | Not Available | Positive | 686072 - 686662 | 22613.5 |
| duf4974 domain-containing protein | FBD94_02585 | Not Available | Positive | 686749 - 687945 | 44148.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

