Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1579 domain-containing protein | FBD94_02490 | Not Available | Positive | 663203 - 663772 | 21230.9 |
| peptide-methionine (s)-s-oxide reductase msra | FBD94_02495 | Not Available | Positive | 663888 - 664379 | 18429.5 |
| cupin domain-containing protein | FBD94_02500 | Not Available | Positive | 664443 - 664859 | 15313.9 |
| potassium transporter kup | FBD94_02505 | Not Available | Negative | 664874 - 666811 | 72516.3 |
| heparinase | FBD94_02510 | Not Available | Negative | 666889 - 668865 | 75743.8 |
| heparinase | FBD94_02515 | Not Available | Negative | 668871 - 670850 | 75104.7 |
| glucuronyl hydrolase | FBD94_02520 | Not Available | Negative | 670863 - 672071 | 45489.8 |
| hypothetical protein | FBD94_02525 | Not Available | Positive | 672262 - 672597 | 12586.5 |
| sigma-70 family rna polymerase sigma factor | FBD94_02530 | Not Available | Positive | 672749 - 673345 | 23176.6 |
| duf4974 domain-containing protein | FBD94_02535 | Not Available | Positive | 673403 - 674329 | 34696.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

