Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_02440 | Not Available | Negative | 648362 - 649591 | 46608.7 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_02445 | Not Available | Negative | 649608 - 651029 | 54516.8 |
| susc/raga family tonb-linked outer membrane protein | FBD94_02450 | Not Available | Negative | 651044 - 654640 | 132933.0 |
| duf4974 domain-containing protein | FBD94_02455 | Not Available | Negative | 654797 - 655906 | 41437.7 |
| rna polymerase sigma-70 factor | FBD94_02460 | Not Available | Negative | 655967 - 656560 | 22712.7 |
| hypothetical protein | FBD94_02465 | Not Available | Negative | 656666 - 657442 | 29275.7 |
| rna-binding protein | FBD94_02470 | Not Available | Positive | 657566 - 657958 | 14816.7 |
| type i methionyl aminopeptidase | FBD94_02475 | Not Available | Negative | 657994 - 658752 | 27450.7 |
| arac family transcriptional regulator | FBD94_02480 | Not Available | Positive | 658866 - 659711 | 32753.8 |
| chemotaxis protein cher | FBD94_02485 | Not Available | Positive | 659832 - 663002 | 119298.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

