Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | FBD94_02340 | Not Available | Positive | 616599 - 617777 | 43169.4 |
| susc/raga family tonb-linked outer membrane protein | FBD94_02345 | Not Available | Positive | 617921 - 621526 | 134580.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_02350 | Not Available | Positive | 621538 - 622875 | 50076.2 |
| tlpa family protein disulfide reductase | FBD94_02355 | Not Available | Positive | 623164 - 624135 | 36909.2 |
| glycosyltransferase family 2 protein | FBD94_02360 | Not Available | Positive | 624289 - 625242 | 36313.3 |
| glycosyltransferase | FBD94_02365 | Not Available | Positive | 625246 - 626214 | 37374.6 |
| hypothetical protein | FBD94_02370 | Not Available | Positive | 626211 - 626996 | 29788.8 |
| gh3 auxin-responsive promoter family protein | FBD94_02375 | Not Available | Positive | 627006 - 628538 | 57250.5 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | FBD94_02380 | Not Available | Positive | 628539 - 629690 | 41507.3 |
| rip metalloprotease rsep | FBD94_02385 | Not Available | Positive | 629727 - 631061 | 49064.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

