Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | FBD94_02290 | Not Available | Negative | 604775 - 605626 | 30685.5 |
| helix-turn-helix transcriptional regulator | FBD94_02295 | Not Available | Negative | 605882 - 606274 | 14767.0 |
| m23 family metallopeptidase | FBD94_02300 | Not Available | Positive | 606756 - 607694 | 34632.4 |
| l,d-transpeptidase | FBD94_02305 | Not Available | Positive | 607759 - 609336 | 61176.8 |
| hypothetical protein | FBD94_02310 | Not Available | Positive | 609358 - 611406 | 76403.0 |
| dihydroorotase | FBD94_02315 | Not Available | Positive | 611403 - 612674 | 45402.7 |
| hypothetical protein | FBD94_02320 | Not Available | Positive | 612667 - 613335 | 25791.1 |
| duf4199 domain-containing protein | FBD94_02325 | Not Available | Positive | 613355 - 613936 | 21159.7 |
| hybrid sensor histidine kinase/response regulator | FBD94_02330 | Not Available | Negative | 614008 - 615696 | 63595.1 |
| sigma-70 family rna polymerase sigma factor | FBD94_02335 | Not Available | Positive | 615954 - 616514 | 21812.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

