Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_02240 | Not Available | Negative | 592540 - 594180 | 60279.0 |
| susc/raga family tonb-linked outer membrane protein | FBD94_02245 | Not Available | Negative | 594192 - 597311 | 113899.0 |
| wd40 repeat domain-containing protein | FBD94_02250 | Not Available | Negative | 597634 - 598533 | 33719.3 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | FBD94_02255 | Not Available | Negative | 598539 - 599129 | 22362.6 |
| imidazole glycerol phosphate synthase subunit hisf | FBD94_02260 | Not Available | Negative | 599126 - 599881 | 27081.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | FBD94_02265 | Not Available | Negative | 599886 - 600635 | 27918.8 |
| imidazole glycerol phosphate synthase subunit hish | FBD94_02270 | Not Available | Negative | 600637 - 601230 | 21749.3 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | FBD94_02275 | Not Available | Negative | 601230 - 602363 | 42303.4 |
| histidinol-phosphate transaminase | FBD94_02280 | Not Available | Negative | 602381 - 603424 | 38910.7 |
| histidinol dehydrogenase | FBD94_02285 | Not Available | Negative | 603426 - 604715 | 46441.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

