Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_02085 | Not Available | Positive | 558176 - 559519 | 47967.9 |
| abc transporter permease | FBD94_02090 | Not Available | Positive | 559535 - 560194 | 24416.1 |
| gamma-glutamylcyclotransferase | FBD94_02095 | Not Available | Positive | 560206 - 560541 | 12434.6 |
| response regulator transcription factor | FBD94_02100 | Not Available | Negative | 560549 - 561238 | 26216.0 |
| histidine kinase | FBD94_02105 | Not Available | Negative | 561235 - 562254 | 39848.5 |
| tolc family protein | FBD94_02110 | Not Available | Positive | 562408 - 563781 | 51187.0 |
| efflux rnd transporter permease subunit | FBD94_02115 | Not Available | Positive | 563794 - 567066 | 118938.0 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_02120 | Not Available | Positive | 567096 - 568178 | 39332.3 |
| abc transporter permease | FBD94_02125 | Not Available | Positive | 568268 - 568927 | 25119.8 |
| ccmd family protein | FBD94_02130 | Not Available | Positive | 568963 - 569148 | 6867.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

