Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ix secretion system membrane protein porp/sprf | FBD94_00125 | Not Available | Negative | 27705 - 28589 | 32388.8 |
| gliding motility-associated c-terminal domain-containing protein | FBD94_00130 | Not Available | Negative | 28591 - 30672 | 73377.7 |
| phosphatidylinositol-specific phospholipase c domain-containing protein | FBD94_00135 | Not Available | Negative | 30748 - 32151 | 52908.3 |
| hypothetical protein | FBD94_00140 | Not Available | Positive | 32134 - 34212 | 79140.5 |
| response regulator transcription factor | FBD94_00145 | Not Available | Positive | 34202 - 34831 | 23539.2 |
| mercuric reductase | FBD94_00150 | Not Available | Positive | 35134 - 36516 | 49897.3 |
| atp-binding cassette domain-containing protein | FBD94_00155 | Not Available | Positive | 36523 - 37491 | 36297.1 |
| abc transporter permease subunit | FBD94_00160 | Not Available | Positive | 37484 - 39055 | 57405.3 |
| duf3606 domain-containing protein | FBD94_00170 | Not Available | Positive | 39611 - 39790 | 6922.98 |
| hypothetical protein | FBD94_00175 | Not Available | Positive | 40094 - 40399 | 10805.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

