Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| riboflavin synthase | FBD94_01835 | Not Available | Positive | 506442 - 507026 | 21537.7 |
| tetratricopeptide repeat protein | FBD94_01840 | Not Available | Negative | 507027 - 507971 | 36048.3 |
| hypothetical protein | FBD94_01845 | Not Available | Positive | 508083 - 508382 | 11221.3 |
| pas domain-containing sensor histidine kinase | FBD94_01850 | Not Available | Negative | 508399 - 510165 | 67719.2 |
| port family protein | FBD94_01855 | Not Available | Positive | 510309 - 510896 | 20740.9 |
| hypothetical protein | FBD94_01860 | Not Available | Positive | 511009 - 511281 | 10375.7 |
| yihy/virulence factor brkb family protein | FBD94_01865 | Not Available | Negative | 511291 - 512211 | 35114.7 |
| 4-hydroxyphenylpyruvate dioxygenase | FBD94_01870 | Not Available | Negative | 512338 - 513468 | 42550.4 |
| homogentisate 1,2-dioxygenase | FBD94_01875 | Not Available | Negative | 513530 - 514696 | 44800.1 |
| anaerobic c4-dicarboxylate transporter | FBD94_01880 | Not Available | Positive | 515104 - 516432 | 47210.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

