Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redoxin domain-containing protein | FBD94_01785 | Not Available | Positive | 492125 - 493258 | 41393.8 |
| susc/raga family tonb-linked outer membrane protein | FBD94_01790 | Not Available | Positive | 493421 - 497008 | 134332.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01795 | Not Available | Positive | 497019 - 498575 | 57954.8 |
| type i glyceraldehyde-3-phosphate dehydrogenase | FBD94_01800 | Not Available | Negative | 498657 - 499658 | 35812.8 |
| hypothetical protein | FBD94_01805 | Not Available | Negative | 499663 - 500505 | 31564.1 |
| 6-phosphofructokinase | FBD94_01810 | Not Available | Negative | 500507 - 501493 | 35471.7 |
| nudix hydrolase | FBD94_01815 | Not Available | Positive | 501771 - 502460 | 27063.8 |
| n-acetylglucosamine kinase | FBD94_01820 | Not Available | Negative | 502718 - 503575 | 32199.0 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | FBD94_01825 | Not Available | Positive | 503899 - 504933 | 37218.1 |
| acetyl-coa carboxylase biotin carboxylase subunit | FBD94_01830 | Not Available | Positive | 504947 - 506431 | 55010.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

