Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FBD94_01635 | Not Available | Positive | 454732 - 455973 | 46097.8 |
| histone h1 | FBD94_01640 | Not Available | Positive | 456235 - 456411 | 6497.81 |
| 4-hydroxy-tetrahydrodipicolinate synthase | FBD94_01645 | Not Available | Negative | 456482 - 457363 | 31746.1 |
| nad-dependent dna ligase liga | FBD94_01650 | Not Available | Negative | 457374 - 459386 | 75987.9 |
| duf479 domain-containing protein | FBD94_01655 | Not Available | Negative | 459440 - 460120 | 26653.8 |
| tyrosine--trna ligase | FBD94_01660 | Not Available | Positive | 460223 - 461512 | 48034.5 |
| duf2384 domain-containing protein | FBD94_01665 | Not Available | Positive | 461603 - 462085 | 17851.6 |
| res domain-containing protein | FBD94_01670 | Not Available | Positive | 462085 - 462546 | 17240.1 |
| acyl transferase | FBD94_01675 | Not Available | Negative | 462535 - 463518 | 36859.1 |
| hypothetical protein | FBD94_01680 | Not Available | Negative | 463546 - 463896 | 12915.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

