Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | FBD94_16905 | Not Available | Negative | 4269756 - 4270079 | 11938.5 |
| hypothetical protein | FBD94_16910 | Not Available | Negative | 4270082 - 4270648 | 21985.2 |
| nudix domain-containing protein | FBD94_16915 | Not Available | Negative | 4270873 - 4271334 | 17214.5 |
| gnat family n-acetyltransferase | FBD94_16920 | Not Available | Negative | 4271349 - 4271900 | 20928.3 |
| hypothetical protein | FBD94_16925 | Not Available | Positive | 4272029 - 4272616 | 22576.2 |
| nuclear transport factor 2 family protein | FBD94_16930 | Not Available | Negative | 4272638 - 4273012 | 13886.9 |
| hypothetical protein | FBD94_16935 | Not Available | Negative | 4273209 - 4273505 | 11286.3 |
| mfs transporter | FBD94_16940 | Not Available | Positive | 4273579 - 4274787 | 44851.4 |
| sdr family oxidoreductase | FBD94_16950 | Not Available | Negative | 4275281 - 4276699 | 53727.5 |
| winged helix-turn-helix transcriptional regulator | FBD94_16955 | Not Available | Positive | 4276780 - 4277451 | 25859.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

