Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | FBD94_16605 | Not Available | Negative | 4202065 - 4203348 | 48078.8 |
| helix-turn-helix transcriptional regulator | FBD94_16610 | Not Available | Negative | 4203348 - 4203695 | 13049.8 |
| alpha/beta hydrolase | FBD94_16615 | Not Available | Negative | 4203979 - 4204800 | 30289.0 |
| hypothetical protein | FBD94_16620 | Not Available | Positive | 4204934 - 4206121 | 44918.3 |
| dihydrofolate reductase | FBD94_16625 | Not Available | Negative | 4206125 - 4206694 | 21276.3 |
| yjbq family protein | FBD94_16630 | Not Available | Negative | 4206851 - 4207279 | 16007.1 |
| hypothetical protein | FBD94_16635 | Not Available | Positive | 4207355 - 4208071 | 27316.6 |
| duf2809 domain-containing protein | FBD94_16640 | Not Available | Negative | 4208054 - 4208440 | 14557.7 |
| hypothetical protein | FBD94_16645 | Not Available | Negative | 4208452 - 4208982 | 19145.3 |
| pas domain s-box protein | FBD94_16650 | Not Available | Positive | 4209433 - 4210458 | 39283.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

