Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_16550 | Not Available | Negative | 4185868 - 4186071 | 7825.34 |
| ahpc/tsa family protein | FBD94_16555 | Not Available | Negative | 4186265 - 4187401 | 42246.9 |
| dna mismatch repair protein | FBD94_16560 | Not Available | Negative | 4187424 - 4188743 | 49179.2 |
| dna mismatch repair protein | FBD94_16565 | Not Available | Negative | 4188740 - 4190071 | 49916.9 |
| abc transporter | FBD94_16570 | Not Available | Negative | 4190083 - 4192905 | 104126.0 |
| abc transporter atp-binding protein | FBD94_16575 | Not Available | Negative | 4192905 - 4193840 | 34958.3 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_16580 | Not Available | Negative | 4193943 - 4195436 | 55365.5 |
| susc/raga family tonb-linked outer membrane protein | FBD94_16585 | Not Available | Negative | 4195456 - 4199106 | 133364.0 |
| duf4974 domain-containing protein | FBD94_16590 | Not Available | Negative | 4199322 - 4200485 | 43693.1 |
| rna polymerase sigma-70 factor | FBD94_16595 | Not Available | Negative | 4200585 - 4201199 | 23897.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

