Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | FBD94_16450 | Not Available | Negative | 4154842 - 4155966 | 42221.3 |
| rna polymerase sigma-70 factor | FBD94_16455 | Not Available | Negative | 4156069 - 4156647 | 22774.9 |
| nadp-dependent oxidoreductase | FBD94_16460 | Not Available | Negative | 4156985 - 4157959 | 35358.6 |
| helix-turn-helix domain-containing protein | FBD94_16465 | Not Available | Negative | 4158115 - 4158921 | 31589.2 |
| carbohydrate-binding protein | FBD94_16470 | Not Available | Negative | 4159214 - 4161877 | 97440.7 |
| sugar phosphate isomerase/epimerase | FBD94_16475 | Not Available | Negative | 4161883 - 4162767 | 32599.0 |
| hypothetical protein | FBD94_16480 | Not Available | Negative | 4162893 - 4163819 | 35012.5 |
| alpha-galactosidase | FBD94_16485 | Not Available | Negative | 4163985 - 4166141 | 82006.3 |
| duf5013 domain-containing protein | FBD94_16490 | Not Available | Negative | 4166222 - 4167460 | 44961.2 |
| duf4959 domain-containing protein | FBD94_16495 | Not Available | Negative | 4167450 - 4168640 | 43823.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

