Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybfb/yjij family mfs transporter | FBD94_16400 | Not Available | Negative | 4140119 - 4141306 | 42232.6 |
| lysr family transcriptional regulator | FBD94_16405 | Not Available | Positive | 4141385 - 4142266 | 32668.8 |
| crp/fnr family transcriptional regulator | FBD94_16410 | Not Available | Positive | 4142304 - 4142888 | 22760.5 |
| pirin family protein | FBD94_16415 | Not Available | Positive | 4143006 - 4143869 | 32236.3 |
| helix-turn-helix domain-containing protein | FBD94_16420 | Not Available | Negative | 4143934 - 4144830 | 34798.6 |
| sdr family nad(p)-dependent oxidoreductase | FBD94_16425 | Not Available | Negative | 4144906 - 4145721 | 29478.0 |
| insulinase family protein | FBD94_16430 | Not Available | Negative | 4145993 - 4148821 | 104940.0 |
| duf1735 domain-containing protein | FBD94_16435 | Not Available | Negative | 4148887 - 4149402 | 18559.8 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_16440 | Not Available | Negative | 4149412 - 4151025 | 59828.3 |
| susc/raga family tonb-linked outer membrane protein | FBD94_16445 | Not Available | Negative | 4151046 - 4154615 | 131644.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

