Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1801 domain-containing protein | FBD94_16350 | Not Available | Negative | 4131120 - 4131512 | 14994.9 |
| hypothetical protein | FBD94_16355 | Not Available | Negative | 4131518 - 4132255 | 27755.9 |
| organic hydroperoxide resistance protein | FBD94_16360 | Not Available | Positive | 4132494 - 4132910 | 14407.2 |
| epoxide hydrolase | FBD94_16365 | Not Available | Positive | 4133005 - 4134285 | 47048.3 |
| cupin domain-containing protein | FBD94_16370 | Not Available | Positive | 4134381 - 4134791 | 15039.4 |
| gaf domain-containing protein | FBD94_16375 | Not Available | Negative | 4134775 - 4137078 | 88039.6 |
| duf1223 domain-containing protein | FBD94_16380 | Not Available | Negative | 4137103 - 4137891 | 28622.4 |
| duf1223 domain-containing protein | FBD94_16385 | Not Available | Negative | 4138044 - 4138814 | 28052.6 |
| crp/fnr family transcriptional regulator | FBD94_16390 | Not Available | Positive | 4138986 - 4139561 | 23050.8 |
| carboxymuconolactone decarboxylase family protein | FBD94_16395 | Not Available | Positive | 4139628 - 4140068 | 16727.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

