Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1255 family protein | FBD94_16245 | Not Available | Negative | 4108160 - 4108462 | 10649.6 |
| uma2 family endonuclease | FBD94_16250 | Not Available | Negative | 4108530 - 4109216 | 26108.3 |
| sigma-54-dependent fis family transcriptional regulator | FBD94_16260 | Not Available | Positive | 4109813 - 4111219 | 52516.9 |
| chloride channel protein | FBD94_16265 | Not Available | Negative | 4111261 - 4113045 | 65376.0 |
| rlua family pseudouridine synthase | FBD94_16270 | Not Available | Negative | 4113059 - 4113781 | 27532.3 |
| response regulator transcription factor | FBD94_16275 | Not Available | Negative | 4113812 - 4114501 | 26008.8 |
| ahpc/tsa family protein | FBD94_16280 | Not Available | Negative | 4114607 - 4115716 | 41116.1 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatb | FBD94_16285 | Not Available | Negative | 4115725 - 4117188 | 54400.1 |
| oxidoreductase | FBD94_16290 | Not Available | Positive | 4117362 - 4118012 | 24348.6 |
| tonb-dependent receptor | FBD94_16295 | Not Available | Negative | 4118009 - 4119931 | 71387.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

