Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| blai/meci/copy family transcriptional regulator | FBD94_15740 | Not Available | Positive | 3990887 - 3991264 | 14720.8 |
| tonb family protein | FBD94_15745 | Not Available | Positive | 3991261 - 3993258 | 74685.1 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | FBD94_15750 | Not Available | Negative | 3993655 - 3994425 | 27868.3 |
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | FBD94_15755 | Not Available | Negative | 3994452 - 3996431 | 73425.3 |
| succinate dehydrogenase cytochrome b subunit | FBD94_15760 | Not Available | Negative | 3996457 - 3997137 | 25101.6 |
| pdz domain-containing protein | FBD94_15765 | Not Available | Negative | 3997319 - 3998842 | 52895.0 |
| diaminopimelate epimerase | FBD94_15770 | Not Available | Positive | 3998997 - 3999782 | 29311.3 |
| helicase | FBD94_15775 | Not Available | Negative | 3999799 - 4002093 | 86602.4 |
| duf4153 domain-containing protein | FBD94_15780 | Not Available | Negative | 4002117 - 4003922 | 68009.2 |
| tonb-dependent receptor | FBD94_15785 | Not Available | Positive | 4004065 - 4006806 | 101092.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

