Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | FBD94_15490 | Not Available | Positive | 3926646 - 3927608 | 34930.0 |
| phosphoserine phosphatase | FBD94_15495 | Not Available | Positive | 3927676 - 3928974 | 49522.9 |
| tryptophan 2,3-dioxygenase | FBD94_15500 | Not Available | Positive | 3929022 - 3929978 | 37358.8 |
| atp-binding protein | FBD94_15505 | Not Available | Positive | 3930090 - 3931274 | 44825.1 |
| branched-chain amino acid aminotransferase | FBD94_15510 | Not Available | Positive | 3931335 - 3932399 | 38911.3 |
| s9 family peptidase | FBD94_15515 | Not Available | Positive | 3932491 - 3934611 | 80702.2 |
| tetratricopeptide repeat protein | FBD94_15520 | Not Available | Positive | 3934843 - 3936444 | 61394.9 |
| tonb-dependent receptor | FBD94_15525 | Not Available | Positive | 3936694 - 3939459 | 103817.0 |
| right-handed parallel beta-helix repeat-containing protein | FBD94_15530 | Not Available | Positive | 3939491 - 3940747 | 44994.2 |
| phytase | FBD94_15535 | Not Available | Positive | 3940810 - 3941880 | 39642.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

