Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyhypusine synthase | FBD94_15235 | Not Available | Negative | 3862427 - 3863407 | 36908.2 |
| polymerase | FBD94_15240 | Not Available | Positive | 3863524 - 3864654 | 42321.6 |
| sam-dependent methyltransferase | FBD94_15245 | Not Available | Negative | 3864667 - 3865449 | 29754.9 |
| hypothetical protein | FBD94_15250 | Not Available | Positive | 3865486 - 3866355 | 33686.0 |
| alpha/beta hydrolase | FBD94_15255 | Not Available | Negative | 3866350 - 3867261 | 32962.6 |
| peptide chain release factor 2 | FBD94_15260 | Not Available | Negative | 3867264 - 3868338 | 41258.8 |
| hypothetical protein | FBD94_15265 | Not Available | Negative | 3868427 - 3868921 | 16872.6 |
| glucose-6-phosphate isomerase | FBD94_15270 | Not Available | Positive | 3869084 - 3870730 | 61493.1 |
| duf4251 domain-containing protein | FBD94_15275 | Not Available | Positive | 3870902 - 3871432 | 19480.4 |
| glutaminyl-peptide cyclotransferase | FBD94_15280 | Not Available | Negative | 3871504 - 3872595 | 40305.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

