Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | FBD94_15035 | Not Available | Negative | 3819030 - 3819656 | 22845.7 |
| aaa family atpase | FBD94_15040 | Not Available | Positive | 3819746 - 3820495 | 28114.4 |
| amino acid permease | FBD94_15045 | Not Available | Positive | 3820559 - 3822007 | 53117.1 |
| radical sam family heme chaperone hemw | FBD94_15050 | Not Available | Positive | 3822045 - 3823184 | 43122.0 |
| sdr family oxidoreductase | FBD94_15055 | Not Available | Positive | 3823202 - 3823987 | 28543.7 |
| formylglycine-generating enzyme family protein | FBD94_15060 | Not Available | Negative | 3824017 - 3825117 | 40589.4 |
| duf1501 domain-containing protein | FBD94_15065 | Not Available | Negative | 3825179 - 3826444 | 45483.4 |
| duf1800 domain-containing protein | FBD94_15070 | Not Available | Negative | 3826462 - 3828450 | 73832.7 |
| fasciclin domain-containing protein | FBD94_15075 | Not Available | Positive | 3828610 - 3829161 | 19403.0 |
| cupin-like domain-containing protein | FBD94_15080 | Not Available | Positive | 3829335 - 3830219 | 34728.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

