Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | FBD94_00075 | Not Available | Positive | 15644 - 16606 | 36809.0 |
| susc/raga family tonb-linked outer membrane protein | FBD94_00080 | Not Available | Positive | 16771 - 20190 | 125121.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_00085 | Not Available | Positive | 20202 - 21677 | 55769.4 |
| endonuclease/exonuclease/phosphatase family protein | FBD94_00090 | Not Available | Positive | 21662 - 22540 | 33687.2 |
| hypothetical protein | FBD94_00095 | Not Available | Positive | 22544 - 23467 | 35233.8 |
| hydrolase | FBD94_00100 | Not Available | Positive | 23469 - 24572 | 40583.6 |
| hypothetical protein | FBD94_00105 | Not Available | Negative | 24609 - 24932 | 12370.4 |
| sdr family oxidoreductase | FBD94_00110 | Not Available | Negative | 25039 - 25791 | 26833.0 |
| sdr family oxidoreductase | FBD94_00115 | Not Available | Negative | 25854 - 26591 | 26170.3 |
| helix-turn-helix domain-containing protein | FBD94_00120 | Not Available | Negative | 26705 - 27631 | 35968.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

