Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pirin family protein | FBD94_14985 | Not Available | Positive | 3806299 - 3807018 | 26814.6 |
| hypothetical protein | FBD94_14990 | Not Available | Positive | 3807026 - 3807325 | 10984.6 |
| hypothetical protein | FBD94_14995 | Not Available | Negative | 3807400 - 3808305 | 32490.5 |
| tlpa family protein disulfide reductase | FBD94_15000 | Not Available | Negative | 3808368 - 3809747 | 51335.8 |
| hypothetical protein | FBD94_15005 | Not Available | Negative | 3809819 - 3811345 | 57209.3 |
| duf4843 domain-containing protein | FBD94_15010 | Not Available | Negative | 3811364 - 3812125 | 28214.3 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_15015 | Not Available | Negative | 3812140 - 3813579 | 53653.8 |
| susc/raga family tonb-linked outer membrane protein | FBD94_15020 | Not Available | Negative | 3813593 - 3816958 | 124506.0 |
| fecr family protein | FBD94_15025 | Not Available | Negative | 3817174 - 3818307 | 41862.0 |
| rna polymerase sigma-70 factor | FBD94_15030 | Not Available | Negative | 3818377 - 3818955 | 22794.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

