Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | FBD94_14835 | Not Available | Negative | 3766960 - 3767793 | 31940.1 |
| duf1905 domain-containing protein | FBD94_14840 | Not Available | Negative | 3768043 - 3768531 | 18490.8 |
| heparinase | FBD94_14845 | Not Available | Positive | 3768783 - 3771101 | 87849.2 |
| gnat family n-acetyltransferase | FBD94_14850 | Not Available | Negative | 3771117 - 3771917 | 29965.1 |
| deor/glpr transcriptional regulator | FBD94_14855 | Not Available | Negative | 3771957 - 3772706 | 27271.1 |
| mfs transporter | FBD94_14860 | Not Available | Positive | 3772828 - 3774003 | 41499.0 |
| pepsy domain-containing protein | FBD94_14865 | Not Available | Negative | 3774050 - 3775153 | 41730.5 |
| tonb-dependent siderophore receptor | FBD94_14870 | Not Available | Negative | 3775147 - 3777876 | 99545.9 |
| duf4974 domain-containing protein | FBD94_14875 | Not Available | Negative | 3777980 - 3778948 | 36973.4 |
| rna polymerase sigma-70 factor | FBD94_14880 | Not Available | Negative | 3779057 - 3779557 | 19551.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

