Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | FBD94_14430 | Not Available | Negative | 3667915 - 3668862 | 34047.4 |
| isoleucine--trna ligase | FBD94_14435 | Not Available | Positive | 3669426 - 3672818 | 128884.0 |
| trar/dksa family transcriptional regulator | FBD94_14440 | Not Available | Positive | 3672826 - 3673206 | 14452.2 |
| lipoprotein signal peptidase | FBD94_14445 | Not Available | Positive | 3673206 - 3673808 | 22660.1 |
| duf541 domain-containing protein | FBD94_14450 | Not Available | Positive | 3673893 - 3674606 | 26475.2 |
| hypothetical protein | FBD94_14455 | Not Available | Positive | 3674740 - 3675054 | 11624.6 |
| multidrug efflux rnd transporter permease subunit | FBD94_14460 | Not Available | Negative | 3675146 - 3678325 | 114570.0 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_14465 | Not Available | Negative | 3678341 - 3679453 | 39397.4 |
| tolc family protein | FBD94_14470 | Not Available | Negative | 3679463 - 3680812 | 51321.1 |
| serine--trna ligase | FBD94_14475 | Not Available | Negative | 3681072 - 3682343 | 47369.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

