Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_14330 | Not Available | Positive | 3639686 - 3642958 | 120989.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_14335 | Not Available | Positive | 3642970 - 3644409 | 53568.1 |
| hypothetical protein | FBD94_14340 | Not Available | Positive | 3644418 - 3644885 | 17676.5 |
| insulinase family protein | FBD94_14345 | Not Available | Positive | 3644897 - 3647716 | 105858.0 |
| hypothetical protein | FBD94_14350 | Not Available | Positive | 3647722 - 3649476 | 63932.1 |
| metallophosphoesterase | FBD94_14355 | Not Available | Positive | 3649537 - 3651099 | 58897.4 |
| dead/deah box helicase | FBD94_14360 | Not Available | Negative | 3651154 - 3654540 | 129327.0 |
| hypothetical protein | FBD94_14365 | Not Available | Positive | 3654650 - 3655021 | 14208.6 |
| hypothetical protein | FBD94_14370 | Not Available | Positive | 3655027 - 3655725 | 27035.7 |
| hydrolase tatd | FBD94_14375 | Not Available | Positive | 3655734 - 3656720 | 36933.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

