Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine synthase | FBD94_14180 | Not Available | Positive | 3605066 - 3608725 | 135180.0 |
| methylenetetrahydrofolate reductase | FBD94_14185 | Not Available | Positive | 3608807 - 3609763 | 35809.2 |
| meta domain-containing protein | FBD94_14190 | Not Available | Positive | 3609908 - 3610342 | 15714.3 |
| threonine synthase | FBD94_14195 | Not Available | Negative | 3610329 - 3611639 | 48664.1 |
| homoserine kinase | FBD94_14200 | Not Available | Negative | 3611656 - 3612591 | 33398.6 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | FBD94_14205 | Not Available | Negative | 3612598 - 3615045 | 89635.7 |
| ribosome small subunit-dependent gtpase a | FBD94_14210 | Not Available | Positive | 3615339 - 3616259 | 34154.8 |
| d-tyrosyl-trna(tyr) deacylase | FBD94_14215 | Not Available | Positive | 3616263 - 3616715 | 16327.9 |
| pyrophosphatase | FBD94_14220 | Not Available | Positive | 3616717 - 3617043 | 12240.7 |
| hit domain-containing protein | FBD94_14225 | Not Available | Negative | 3617105 - 3617497 | 14326.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

