Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | FBD94_14080 | Not Available | Negative | 3584294 - 3584893 | 23101.2 |
| aspartyl/asparaginyl beta-hydroxylase domain-containing protein | FBD94_14085 | Not Available | Negative | 3584981 - 3585703 | 27406.9 |
| t9ss type b sorting domain-containing protein | FBD94_14090 | Not Available | Negative | 3585848 - 3591661 | 195746.0 |
| phage tail protein | FBD94_14095 | Not Available | Negative | 3591721 - 3592278 | 19109.9 |
| hypothetical protein | FBD94_14100 | Not Available | Negative | 3592316 - 3593254 | 34611.1 |
| hypothetical protein | FBD94_14105 | Not Available | Positive | 3593382 - 3594326 | 34405.6 |
| adenylyl-sulfate kinase | FBD94_14110 | Not Available | Negative | 3594310 - 3594846 | 20396.9 |
| phytanoyl-coa dioxygenase family protein | FBD94_14115 | Not Available | Negative | 3594847 - 3595800 | 37353.3 |
| hypothetical protein | FBD94_14120 | Not Available | Negative | 3595830 - 3596780 | 37274.5 |
| Trna-glu | Not Available | Not Available | Positive | 3596982 - 3597053 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

