Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin | FBD94_14030 | Not Available | Negative | 3566682 - 3567752 | 39611.9 |
| endopygalactorunase | FBD94_14035 | Not Available | Positive | 3567864 - 3570857 | 108572.0 |
| lysr family transcriptional regulator | FBD94_14040 | Not Available | Negative | 3570837 - 3571730 | 33379.9 |
| mfs transporter | FBD94_14045 | Not Available | Positive | 3571845 - 3573071 | 44689.2 |
| t9ss type b sorting domain-containing protein | FBD94_14050 | Not Available | Negative | 3573153 - 3575420 | 77587.5 |
| hypothetical protein | FBD94_14055 | Not Available | Negative | 3575542 - 3576027 | 17686.5 |
| ahpc/tsa family protein | FBD94_14060 | Not Available | Negative | 3576605 - 3577681 | 40080.5 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_14065 | Not Available | Negative | 3577685 - 3579121 | 53200.7 |
| tonb-dependent receptor | FBD94_14070 | Not Available | Negative | 3579182 - 3582664 | 126698.0 |
| duf4974 domain-containing protein | FBD94_14075 | Not Available | Negative | 3582968 - 3584194 | 45635.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

