Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| t9ss type b sorting domain-containing protein | FBD94_01335 | Not Available | Positive | 342096 - 372767 | 1044990.0 |
| type ix secretion system membrane protein porp/sprf | FBD94_01340 | Not Available | Positive | 372791 - 373765 | 36031.1 |
| flagellar motor protein motb | FBD94_01345 | Not Available | Positive | 373776 - 375761 | 74197.4 |
| helix-turn-helix transcriptional regulator | FBD94_01350 | Not Available | Negative | 375785 - 376681 | 34382.9 |
| cupin domain-containing protein | FBD94_01355 | Not Available | Positive | 376887 - 377285 | 14823.5 |
| winged helix-turn-helix domain-containing protein | FBD94_01360 | Not Available | Positive | 377404 - 378594 | 46004.0 |
| gntr family transcriptional regulator | FBD94_01365 | Not Available | Positive | 378713 - 379735 | 39734.9 |
| tonb-dependent receptor | FBD94_01370 | Not Available | Positive | 380136 - 383411 | 121799.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01375 | Not Available | Positive | 383432 - 385369 | 73589.3 |
| duf4959 domain-containing protein | FBD94_01380 | Not Available | Positive | 385387 - 386613 | 45392.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

