Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| t9ss type b sorting domain-containing protein | FBD94_13975 | Not Available | Negative | 3540075 - 3543671 | 128944.0 |
| hypothetical protein | FBD94_13980 | Not Available | Negative | 3543818 - 3545842 | 76184.0 |
| type ix secretion system membrane protein porp/sprf | FBD94_13985 | Not Available | Negative | 3545853 - 3546866 | 36439.6 |
| t9ss type b sorting domain-containing protein | FBD94_13990 | Not Available | Negative | 3546884 - 3556273 | 323577.0 |
| peptidase s8 | FBD94_14000 | Not Available | Negative | 3559217 - 3560812 | 57897.3 |
| rrf2 family transcriptional regulator | FBD94_14005 | Not Available | Negative | 3560952 - 3561389 | 16241.9 |
| hypothetical protein | FBD94_14010 | Not Available | Negative | 3561442 - 3561858 | 15447.8 |
| hypothetical protein | FBD94_14015 | Not Available | Positive | 3562390 - 3562701 | 11090.5 |
| sigma-54-dependent fis family transcriptional regulator | FBD94_14020 | Not Available | Positive | 3562797 - 3564125 | 49176.4 |
| response regulator | FBD94_14025 | Not Available | Negative | 3564129 - 3566630 | 94936.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

