Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m61 family metallopeptidase | FBD94_13925 | Not Available | Negative | 3526041 - 3527783 | 64625.9 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_13930 | Not Available | Positive | 3528138 - 3529235 | 38756.0 |
| efflux rnd transporter permease subunit | FBD94_13935 | Not Available | Positive | 3529232 - 3532336 | 113438.0 |
| tolc family protein | FBD94_13940 | Not Available | Positive | 3532377 - 3533663 | 47422.4 |
| n-acetylglucosamine kinase | FBD94_13945 | Not Available | Positive | 3533682 - 3534536 | 31927.0 |
| hypothetical protein | FBD94_13950 | Not Available | Negative | 3534526 - 3534705 | 6350.92 |
| hypothetical protein | FBD94_13955 | Not Available | Negative | 3534711 - 3537860 | 115783.0 |
| gaf domain-containing protein | FBD94_13960 | Not Available | Negative | 3538055 - 3538594 | 20325.6 |
| hypothetical protein | FBD94_13965 | Not Available | Negative | 3538761 - 3538949 | 7246.6 |
| type ix secretion system membrane protein porp/sprf | FBD94_13970 | Not Available | Positive | 3539042 - 3540052 | 37094.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

