Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ligase-associated dna damage response dexh box helicase | FBD94_13875 | Not Available | Negative | 3511725 - 3514274 | 96784.5 |
| atp-dependent dna ligase | FBD94_13880 | Not Available | Negative | 3514310 - 3515914 | 61576.0 |
| ligase-associated dna damage response exonuclease | FBD94_13885 | Not Available | Negative | 3515915 - 3516925 | 37483.7 |
| ompa family protein | FBD94_13890 | Not Available | Negative | 3517079 - 3518404 | 46726.4 |
| gamma-glutamyltransferase | FBD94_13895 | Not Available | Negative | 3518533 - 3520248 | 61872.2 |
| long-chain fatty acid--coa ligase | FBD94_13900 | Not Available | Negative | 3520226 - 3521998 | 66147.6 |
| copper homeostasis protein cutc | FBD94_13905 | Not Available | Negative | 3522652 - 3523380 | 26896.7 |
| glycosylasparaginase | FBD94_13910 | Not Available | Negative | 3523452 - 3524483 | 37245.0 |
| hypothetical protein | FBD94_13915 | Not Available | Positive | 3524633 - 3525109 | 16815.0 |
| hypothetical protein | FBD94_13920 | Not Available | Negative | 3525196 - 3525570 | 13361.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

