Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | FBD94_13725 | Not Available | Positive | 3469660 - 3470271 | 23462.4 |
| tetr/acrr family transcriptional regulator | FBD94_13730 | Not Available | Positive | 3470386 - 3470997 | 23265.1 |
| tolc family protein | FBD94_13735 | Not Available | Positive | 3471005 - 3472345 | 49643.3 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_13740 | Not Available | Positive | 3472345 - 3473409 | 37987.8 |
| efflux rnd transporter permease subunit | FBD94_13745 | Not Available | Positive | 3473417 - 3476608 | 115882.0 |
| alpha-l-fucosidase | FBD94_13750 | Not Available | Negative | 3476791 - 3478269 | 56345.6 |
| alpha-1,6-mannanase | FBD94_13755 | Not Available | Negative | 3478332 - 3479492 | 44004.6 |
| hypothetical protein | FBD94_13760 | Not Available | Negative | 3479548 - 3480663 | 40967.6 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_13765 | Not Available | Negative | 3480683 - 3482317 | 61567.6 |
| tonb-dependent receptor | FBD94_13770 | Not Available | Negative | 3482341 - 3485673 | 123429.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

