Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_13675 | Not Available | Positive | 3455635 - 3458892 | 121291.0 |
| hypothetical protein | FBD94_13680 | Not Available | Positive | 3458902 - 3459987 | 39823.1 |
| multidrug efflux smr transporter | FBD94_13685 | Not Available | Negative | 3460061 - 3460393 | 11913.2 |
| lta synthase family protein | FBD94_13690 | Not Available | Negative | 3460494 - 3462416 | 72928.9 |
| phosphatase pap2 family protein | FBD94_13695 | Not Available | Negative | 3462426 - 3463163 | 27519.2 |
| tonb-dependent receptor | FBD94_13700 | Not Available | Negative | 3463260 - 3465662 | 90172.6 |
| hamp domain-containing histidine kinase | FBD94_13705 | Not Available | Negative | 3465735 - 3467015 | 49107.1 |
| response regulator transcription factor | FBD94_13710 | Not Available | Negative | 3467012 - 3467686 | 25414.9 |
| rna polymerase sigma factor | FBD94_13715 | Not Available | Negative | 3467789 - 3468319 | 20316.5 |
| udp-n-acetylmuramate dehydrogenase | FBD94_13720 | Not Available | Negative | 3468490 - 3469506 | 36954.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

