Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | FBD94_01285 | Not Available | Positive | 321141 - 324320 | 116779.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01290 | Not Available | Positive | 324327 - 325907 | 59673.9 |
| duf5017 domain-containing protein | FBD94_01295 | Not Available | Positive | 325901 - 326821 | 34087.4 |
| glycerophosphoryl diester phosphodiesterase | FBD94_01300 | Not Available | Positive | 326818 - 329406 | 97402.7 |
| hypothetical protein | FBD94_01305 | Not Available | Positive | 329415 - 332825 | 128227.0 |
| sgnh/gdsl hydrolase family protein | FBD94_01310 | Not Available | Positive | 332818 - 334164 | 49303.4 |
| hypothetical protein | FBD94_01315 | Not Available | Positive | 334230 - 337004 | 104907.0 |
| glycoside hydrolase family 92 protein | FBD94_01320 | Not Available | Positive | 337184 - 339256 | 78576.5 |
| duf2207 domain-containing protein | FBD94_01325 | Not Available | Negative | 339275 - 341218 | 71738.4 |
| lema family protein | FBD94_01330 | Not Available | Negative | 341227 - 341775 | 21310.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

