Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | FBD94_13475 | Not Available | Positive | 3413597 - 3415960 | 88763.4 |
| brxa/brxb family bacilliredoxin | FBD94_13480 | Not Available | Negative | 3416013 - 3416423 | 14748.8 |
| hypothetical protein | FBD94_13485 | Not Available | Positive | 3416631 - 3416939 | 11912.1 |
| adenosylhomocysteinase | FBD94_13490 | Not Available | Positive | 3417010 - 3418326 | 48338.0 |
| mechanosensitive ion channel | FBD94_13495 | Not Available | Negative | 3418408 - 3419982 | 58568.9 |
| pyridoxine 5'-phosphate synthase | FBD94_13500 | Not Available | Positive | 3420006 - 3420725 | 26577.8 |
| aminomethyl-transferring glycine dehydrogenase | FBD94_13505 | Not Available | Positive | 3420810 - 3423686 | 104822.0 |
| ycei family protein | FBD94_13510 | Not Available | Positive | 3423761 - 3424354 | 21298.0 |
| response regulator | FBD94_13515 | Not Available | Positive | 3424497 - 3424892 | 14926.4 |
| mbl fold metallo-hydrolase | FBD94_13520 | Not Available | Negative | 3424899 - 3425663 | 28819.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

