Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | FBD94_13425 | Not Available | Positive | 3403621 - 3405033 | 50997.0 |
| beta-n-acetylhexosaminidase | FBD94_13430 | Not Available | Positive | 3405084 - 3407048 | 74017.8 |
| trna pseudouridine synthase a | FBD94_13435 | Not Available | Positive | 3407065 - 3407874 | 31140.7 |
| doxx family protein | FBD94_13440 | Not Available | Positive | 3407964 - 3408422 | 16894.3 |
| shikimate kinase | FBD94_13445 | Not Available | Negative | 3408442 - 3408951 | 18878.1 |
| abc transporter permease | FBD94_13450 | Not Available | Negative | 3408952 - 3410007 | 39050.3 |
| doxx family protein | FBD94_13455 | Not Available | Negative | 3410010 - 3411161 | 42978.9 |
| duf1599 domain-containing protein | FBD94_13460 | Not Available | Negative | 3411161 - 3411703 | 20516.8 |
| dihydropteroate synthase | FBD94_13465 | Not Available | Positive | 3411776 - 3412642 | 31580.2 |
| tigr00159 family protein | FBD94_13470 | Not Available | Positive | 3412704 - 3413495 | 29658.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

