Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gliding motility-associated c-terminal domain-containing protein | FBD94_13275 | Not Available | Positive | 3357741 - 3358247 | 18869.6 |
| collagen-like protein | FBD94_13280 | Not Available | Positive | 3358333 - 3363406 | 164608.0 |
| aminopeptidase | FBD94_13285 | Not Available | Negative | 3363744 - 3364931 | 43666.6 |
| heparitin sulfate lyase | FBD94_13290 | Not Available | Positive | 3365279 - 3367345 | 78499.4 |
| duf4958 domain-containing protein | FBD94_13295 | Not Available | Positive | 3367365 - 3369494 | 76154.4 |
| tonb-dependent receptor | FBD94_13300 | Not Available | Positive | 3369513 - 3372647 | 114971.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_13305 | Not Available | Positive | 3372665 - 3374350 | 63521.8 |
| rhodanese-related sulfurtransferase | FBD94_13310 | Not Available | Positive | 3374605 - 3375552 | 35404.0 |
| transcriptional regulator | FBD94_13315 | Not Available | Positive | 3375559 - 3378447 | 111084.0 |
| tonb-dependent receptor | FBD94_13320 | Not Available | Positive | 3378706 - 3381774 | 110268.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

