Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | FBD94_13225 | Not Available | Positive | 3342759 - 3344066 | 48765.8 |
| duf1456 family protein | FBD94_13230 | Not Available | Positive | 3344068 - 3344319 | 9272.25 |
| pas domain s-box protein | FBD94_13235 | Not Available | Negative | 3344316 - 3345122 | 31105.8 |
| duf2975 domain-containing protein | FBD94_13240 | Not Available | Positive | 3345263 - 3346225 | 36517.3 |
| helix-turn-helix transcriptional regulator | FBD94_13245 | Not Available | Positive | 3346227 - 3346445 | 7812.71 |
| cupin domain-containing protein | FBD94_13250 | Not Available | Positive | 3346481 - 3346825 | 12880.3 |
| alpha-ketoglutarate-dependent dioxygenase alkb | FBD94_13255 | Not Available | Negative | 3346843 - 3347451 | 23317.9 |
| arac family transcriptional regulator | FBD94_13260 | Not Available | Positive | 3347683 - 3348768 | 42252.0 |
| t9ss type b sorting domain-containing protein | FBD94_13265 | Not Available | Positive | 3348908 - 3356440 | 255462.0 |
| type ix secretion system membrane protein porp/sprf | FBD94_13270 | Not Available | Positive | 3356503 - 3357390 | 32279.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

